Gic of Cognate Recognition in Historical Linguistics. Santa Monica: The RAND Corporation; 1964. Haas MR. The Prehistory of Languages. The Hague and Paris: Mouton; 1969. Needleman SB, Wunsch CD. A gene method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol. 1970;48:443?3. Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol. 1981;1:195?. Feng DF, Doolittle RF. Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol. 1987;25(4):351?0. Lyell C, Vol. 1. Principles of Geology, Being an Attempt to Explain the Former Changes of the Earth’s Surface, by Reference to Causes Now in Operation. London: John Murray; 1830.In what sense did Watson and Crick ‘detect’ DNA? They did not even discover it, they built the correct structural model of DNA that allowed them to explain replication. Authors’ response: We agree and rephrased the sentence accordingly.5. 6.7.Additional fileAdditional file 1: The supplementary material contains the data and source code needed to reproduce PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/25112874 the analyses to retrieve the networks shown in Fig. 5. It can be downloaded at https://zenodo.org/badge/ latestdoi/5137/lingpy/process-based-analogies. (PDF 16 kb) Abbreviations ILS, incomplete lineage sorting; PBA, process-based analogies Acknowledgements We thank the two reviewers for their challenging Sinensetin price critics and helpful advice. We are grateful to David Morrison for sharing his knowledge about early tree- and network models in biology both in personal communication with JML and in multiple blog posts. Funding EB and JSP are supported by the European Research Council under the European Community’s Seventh Framework Programme, FP7/2007?013 Grant Agreement # 615274. JML is supported by the German Research Foundation, Research Fellowship Programme, Grant # 261553824. Availability of data and materials The Additional file 1 contains the data and source code needed to reproduce the analyses to retrieve the networks shown in Fig. 5. It can be downloaded at https://zenodo.org/badge/latestdoi/5137/lingpy/process-based-analogies. Authors’ contributions EB initialized the study, JML and EB set up the first draft. JSP and PL commented and revised later versions of the draft. All authors substantially contributed to the redaction of the manuscript and have given final approval of the version to be published. All authors read and approved the final manuscript. Authors’ information JML is post-doctoral research fellow at UPMC (Equipe AIRE) and EHESS (CRLAO) Paris. JSP is a doctoral student in the Equipe AIRE (Adaptation, Integration, Reticulation Evolution) at UPMC Paris. PL and EB are team leaders of the Equipe AIRE. Competing interests The authors declare that they have no competing interests. Consent for publication Not applicable. Ethics approval and consent to participate Not applicable. Received: 22 May 2016 Accepted: 6 August8. 9.10. 11.12. 13.14. 15. 16.17. 18.19.20.21. 22. 23. 24. 25. 26.27. 28.References 1. Popper KR. Three worlds. Tanner Lect Hum Values. 1978;143?67. http:// tannerlectures.utah.edu/_documents/a-to-z/p/popper80.pdf.29.List et al. Biology Direct (2016) 11:Page 15 of30.31.32. 33.34. 35. 36. 37. 38. 39. 40. 41. 42.43. 44.45.46. 47. 48.49.50.51.52. 53. 54.55. 56. 57.Christy C. Uniformitarianism in nineteenth century linguistics: Implications for a reassessment of the neogrammarian sound-law doctrine In: Koerner EFK, editor. Progress in Linguistic Historiogra.
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