G the importance of variable loops for Env-mediated viral functions may

G the importance of variable loops for Env-mediated viral functions may help develop Env-based vaccine immunogens and therapeutics against HIV-1 infection. Env CD4 binding loop and V3 are known to be involved in binding to the receptor and coreceptor during virus entry. In this study, we found that V1V2 and loop D were also Title Loaded From File critical for Env-mediated virus entry into permissive cells. Therefore, V1V2 and loop D could be key components of vaccine immunogens. Indeed, follow-up studies on the recent RV144 trial demonstrate the importance of V1V2 loop for inducing protective antibodies against HIV-1 infection [15]. Furthermore, V1V2 and loop D constitute partially the neutralizing epitopes of bnmAbs PG9/16 and VRC01, respectively. The critical roles of V1V2 and loop D in virus entry may also be explored for developing entry inhibitors targeting these regions. We did sequence alignment and found that six out of eight amino acids in loop D were highly conserved in all HIV-1 subtype viruses and the rest two relatively conserved (data not shown). Targeting conserved loop D may be an alternative to current approaches that target the CD4bs and/or glycans on Env trimer. We further found that V4 and V5 were indispensable for Env structural integrity, but deletion of V4 or V5 enhanced the exposure of the N-trimer structure and the MPER of Env. Several MPER-specific bnmAbs have been identified, including 2F5, 4E10, Z13e1 and 10e8 [16,17], and many MPER-based peptides have been designed, but they failed to induce the same or similar bnAbs. Our DV4 and DV5 Env proteins may be tested in animals (rabbits or rhesus macaques) for inducing MPER-specific bnAbs. Engineered Env with enhanced exposure of the MPER may help induce MPER-specific nAbs in vivo. Recently revealed cryo-EM structure of JRFL Env trimer suggested the involvement of V1V2 and V3 in gp120 trimer association [18]. Deletion of V1V2 may result in a decreased association of gp120 with Env trimer. Therefore, viral escape from nAbs by increased length and increased number of PNGS inEffects of V4 or V5 Replacement with a Flexible Linker of the Same Length on Env Expression and FunctionTo investigate if V4 and V5 length, or amino acid composition, or both contribute to the importance of V4 and V5 for Env cell surface display and virus assembly, we generated two loop replacement mutants, designated DV4fl and DV5fl, in which V4 or V5 was replaced with a flexible linker of the same length as the original loop (Table 1). Flow cytometry and ELISA results showed that there were no significant differences between DV4 and DV4fl, or between DV5 and DV5fl in Env cell surface display (Fig. 4A and 4B), and in total Env protein expression in the cells (Fig. 4C and 4D), suggesting that amino acid composition of V4 and V5 may play a more important role than the loop length in preserving Env structural integrity and Env function.Figure 3. Effects of V4 and V5 loop deletions on Env structural integrity. 293T cells were co-transfected with recombinant pSVIII plasmid encoding JRFL gp160 WT, or DV4, or DV5 mutant and pcTAT plasmid. 48h post Title Loaded From File transfection, the transfected cells were collected and 23977191 lysed with cell lysis buffer, and added to the ELISA plates coated with anti-HIV antibody D7324. Captured Env proteins were detected using gp120-specific CD4bs mAbs VRC01, b12, or CD4i mAbs X5, 17b, or glycan-specific mAb 2G12, or gp41-specific mAbs 2F5, 4E10, m47 as primary antibody and HRP-anti human IgG, F(ab’)2 as secondary.G the importance of variable loops for Env-mediated viral functions may help develop Env-based vaccine immunogens and therapeutics against HIV-1 infection. Env CD4 binding loop and V3 are known to be involved in binding to the receptor and coreceptor during virus entry. In this study, we found that V1V2 and loop D were also critical for Env-mediated virus entry into permissive cells. Therefore, V1V2 and loop D could be key components of vaccine immunogens. Indeed, follow-up studies on the recent RV144 trial demonstrate the importance of V1V2 loop for inducing protective antibodies against HIV-1 infection [15]. Furthermore, V1V2 and loop D constitute partially the neutralizing epitopes of bnmAbs PG9/16 and VRC01, respectively. The critical roles of V1V2 and loop D in virus entry may also be explored for developing entry inhibitors targeting these regions. We did sequence alignment and found that six out of eight amino acids in loop D were highly conserved in all HIV-1 subtype viruses and the rest two relatively conserved (data not shown). Targeting conserved loop D may be an alternative to current approaches that target the CD4bs and/or glycans on Env trimer. We further found that V4 and V5 were indispensable for Env structural integrity, but deletion of V4 or V5 enhanced the exposure of the N-trimer structure and the MPER of Env. Several MPER-specific bnmAbs have been identified, including 2F5, 4E10, Z13e1 and 10e8 [16,17], and many MPER-based peptides have been designed, but they failed to induce the same or similar bnAbs. Our DV4 and DV5 Env proteins may be tested in animals (rabbits or rhesus macaques) for inducing MPER-specific bnAbs. Engineered Env with enhanced exposure of the MPER may help induce MPER-specific nAbs in vivo. Recently revealed cryo-EM structure of JRFL Env trimer suggested the involvement of V1V2 and V3 in gp120 trimer association [18]. Deletion of V1V2 may result in a decreased association of gp120 with Env trimer. Therefore, viral escape from nAbs by increased length and increased number of PNGS inEffects of V4 or V5 Replacement with a Flexible Linker of the Same Length on Env Expression and FunctionTo investigate if V4 and V5 length, or amino acid composition, or both contribute to the importance of V4 and V5 for Env cell surface display and virus assembly, we generated two loop replacement mutants, designated DV4fl and DV5fl, in which V4 or V5 was replaced with a flexible linker of the same length as the original loop (Table 1). Flow cytometry and ELISA results showed that there were no significant differences between DV4 and DV4fl, or between DV5 and DV5fl in Env cell surface display (Fig. 4A and 4B), and in total Env protein expression in the cells (Fig. 4C and 4D), suggesting that amino acid composition of V4 and V5 may play a more important role than the loop length in preserving Env structural integrity and Env function.Figure 3. Effects of V4 and V5 loop deletions on Env structural integrity. 293T cells were co-transfected with recombinant pSVIII plasmid encoding JRFL gp160 WT, or DV4, or DV5 mutant and pcTAT plasmid. 48h post transfection, the transfected cells were collected and 23977191 lysed with cell lysis buffer, and added to the ELISA plates coated with anti-HIV antibody D7324. Captured Env proteins were detected using gp120-specific CD4bs mAbs VRC01, b12, or CD4i mAbs X5, 17b, or glycan-specific mAb 2G12, or gp41-specific mAbs 2F5, 4E10, m47 as primary antibody and HRP-anti human IgG, F(ab’)2 as secondary.